STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR86990.1Antitoxin Phd_YefM, type II toxin-antitoxin system. (85 aa)    
Predicted Functional Partners:
SFR86978.1
Plasmid stabilization system protein ParE.
 
     0.949
SFR88029.1
Toxin YoeB.
  
 
 0.888
SFR73655.1
mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system.
 
 
 
 0.753
SFR70618.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.744
SFR88767.1
Plasmid stabilization system protein ParE.
 
     0.692
rlmH
23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.561
SFR64316.1
Helix-turn-helix domain-containing protein.
  
     0.441
SFR87010.1
Hypothetical protein.
       0.434
SFR87021.1
Hypothetical protein.
       0.434
Your Current Organism:
Clostridium aminophilum
NCBI taxonomy Id: 1526
Other names: ATCC 49906, DSM 10710, [. aminophilum, [Clostridium] aminophilum, strain F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.