Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR63550.1 | SFR84476.1 | SAMN02910262_00091 | SAMN02910262_02140 | NADPH-dependent glutamate synthase beta chain. | ferredoxin--NADP+ reductase. | 0.925 |
SFR63550.1 | SFR84484.1 | SAMN02910262_00091 | SAMN02910262_02141 | NADPH-dependent glutamate synthase beta chain. | Glutamate synthase (NADPH/NADH) small chain. | 0.660 |
SFR63550.1 | SFR89709.1 | SAMN02910262_00091 | SAMN02910262_02492 | NADPH-dependent glutamate synthase beta chain. | NADPH-dependent glutamate synthase beta chain. | 0.786 |
SFR63550.1 | carB | SAMN02910262_00091 | SAMN02910262_00233 | NADPH-dependent glutamate synthase beta chain. | Carbamoyl-phosphate synthase large subunit. | 0.712 |
SFR63550.1 | pyrC | SAMN02910262_00091 | SAMN02910262_00974 | NADPH-dependent glutamate synthase beta chain. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.424 |
SFR63550.1 | pyrD | SAMN02910262_00091 | SAMN02910262_02448 | NADPH-dependent glutamate synthase beta chain. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.939 |
SFR63550.1 | pyrK | SAMN02910262_00091 | SAMN02910262_02449 | NADPH-dependent glutamate synthase beta chain. | Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.793 |
SFR64483.1 | SFR84476.1 | SAMN02910262_00223 | SAMN02910262_02140 | Orotate phosphoribosyltransferase. | ferredoxin--NADP+ reductase. | 0.781 |
SFR64483.1 | carB | SAMN02910262_00223 | SAMN02910262_00233 | Orotate phosphoribosyltransferase. | Carbamoyl-phosphate synthase large subunit. | 0.789 |
SFR64483.1 | pyrC | SAMN02910262_00223 | SAMN02910262_00974 | Orotate phosphoribosyltransferase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.853 |
SFR64483.1 | pyrD | SAMN02910262_00223 | SAMN02910262_02448 | Orotate phosphoribosyltransferase. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.951 |
SFR64483.1 | pyrF | SAMN02910262_00223 | SAMN02910262_02450 | Orotate phosphoribosyltransferase. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.978 |
SFR64483.1 | pyrK | SAMN02910262_00223 | SAMN02910262_02449 | Orotate phosphoribosyltransferase. | Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.966 |
SFR84476.1 | SFR63550.1 | SAMN02910262_02140 | SAMN02910262_00091 | ferredoxin--NADP+ reductase. | NADPH-dependent glutamate synthase beta chain. | 0.925 |
SFR84476.1 | SFR64483.1 | SAMN02910262_02140 | SAMN02910262_00223 | ferredoxin--NADP+ reductase. | Orotate phosphoribosyltransferase. | 0.781 |
SFR84476.1 | SFR84484.1 | SAMN02910262_02140 | SAMN02910262_02141 | ferredoxin--NADP+ reductase. | Glutamate synthase (NADPH/NADH) small chain. | 0.999 |
SFR84476.1 | SFR89709.1 | SAMN02910262_02140 | SAMN02910262_02492 | ferredoxin--NADP+ reductase. | NADPH-dependent glutamate synthase beta chain. | 0.961 |
SFR84476.1 | carB | SAMN02910262_02140 | SAMN02910262_00233 | ferredoxin--NADP+ reductase. | Carbamoyl-phosphate synthase large subunit. | 0.873 |
SFR84476.1 | pyrC | SAMN02910262_02140 | SAMN02910262_00974 | ferredoxin--NADP+ reductase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.860 |
SFR84476.1 | pyrD | SAMN02910262_02140 | SAMN02910262_02448 | ferredoxin--NADP+ reductase. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.970 |
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