STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS97447.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)    
Predicted Functional Partners:
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.773
ALS97989.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
ALT00535.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
ALS97236.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
ALT00489.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
ALS98572.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
ALS99808.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
ALT00362.1
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.743
ALS99688.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
ALS97679.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
Your Current Organism:
Lacimicrobium alkaliphilum
NCBI taxonomy Id: 1526571
Other names: Alteromonadaceae bacterium X13M-12, CGMCC 1.12923, KCTC 42674, L. alkaliphilum, Lacimicrobium alkaliphilum Zhong et al. 2016, strain X13M-12
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