STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS98902.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)    
Predicted Functional Partners:
ALS98230.1
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
ALS99937.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
ALS97737.1
Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
ALS98082.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.675
ALT00079.1
Peptidase M14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.672
ALS98845.1
Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
ALS99335.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
ALS97056.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.506
ALS98901.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
Your Current Organism:
Lacimicrobium alkaliphilum
NCBI taxonomy Id: 1526571
Other names: Alteromonadaceae bacterium X13M-12, CGMCC 1.12923, KCTC 42674, L. alkaliphilum, Lacimicrobium alkaliphilum Zhong et al. 2016, strain X13M-12
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