Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
KMJ54809.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)    
Predicted Functional Partners:
KMJ54214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.727
KMJ54147.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.725
KMJ54148.1
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family.
   
   0.649
KMJ53518.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.634
KMJ52402.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.634
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.613
KMJ54795.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.604
KMJ54810.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.580
KMJ54463.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.484
KMJ52668.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.484
Your Current Organism:
Vogesella sp. EB
NCBI taxonomy Id: 1526735
Other names: V. sp. EB
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