KMJ54809.1 protein (Vogesella sp. EB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KMJ54809.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)

Predicted Functional Partners:

KMJ54147.1

0.866

ribB

0.645

KMJ54810.1

0.580

KMJ54063.1

0.546

KMJ52292.1

0.458

polA

0.457

KMJ54292.1

0.445

moaA

0.437

KMJ53560.1

0.430

KMJ53074.1

0.430

Your Current Organism:

Vogesella sp. EB

NCBI taxonomy Id: 1526735
Other names: V. sp. EB

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMJ52292.1	KMJ53074.1	ACG97_14445	ACG97_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KMJ52292.1	KMJ53560.1	ACG97_14445	ACG97_07465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KMJ52292.1	KMJ54063.1	ACG97_14445	ACG97_04460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KMJ52292.1	KMJ54147.1	ACG97_14445	ACG97_04920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
KMJ52292.1	KMJ54809.1	ACG97_14445	ACG97_00575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
KMJ52292.1	KMJ54810.1	ACG97_14445	ACG97_00580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
KMJ52292.1	moaA	ACG97_14445	ACG97_00845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdenum cofactor biosynthesis protein MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.	0.919
KMJ52292.1	polA	ACG97_14445	ACG97_13625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.576
KMJ52292.1	ribB	ACG97_14445	ACG97_00645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.947
KMJ53074.1	KMJ52292.1	ACG97_10235	ACG97_14445	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KMJ53074.1	KMJ53560.1	ACG97_10235	ACG97_07465	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KMJ53074.1	KMJ54063.1	ACG97_10235	ACG97_04460	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
KMJ53074.1	KMJ54292.1	ACG97_10235	ACG97_04205	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
KMJ53074.1	KMJ54809.1	ACG97_10235	ACG97_00575	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
KMJ53074.1	moaA	ACG97_10235	ACG97_00845	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdenum cofactor biosynthesis protein MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.	0.787
KMJ53074.1	ribB	ACG97_10235	ACG97_00645	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.923
KMJ53560.1	KMJ52292.1	ACG97_07465	ACG97_14445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KMJ53560.1	KMJ53074.1	ACG97_07465	ACG97_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KMJ53560.1	KMJ54063.1	ACG97_07465	ACG97_04460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
KMJ53560.1	KMJ54292.1	ACG97_07465	ACG97_04205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491