KMJ54174.1 protein (Vogesella sp. EB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KMJ54174.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)

Predicted Functional Partners:

KMJ54396.1

0.630

KMJ53720.1

0.558

KMJ52319.1

0.556

apaH

0.502

KMJ52055.1

0.495

hldD

0.466

KMJ53993.1

0.466

KMJ54785.1

0.452

KMJ54051.1

0.442

surE

0.436

Your Current Organism:

Vogesella sp. EB

NCBI taxonomy Id: 1526735
Other names: V. sp. EB

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMJ52055.1	KMJ52319.1	ACG97_15615	ACG97_14245	Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
KMJ52055.1	KMJ54174.1	ACG97_15615	ACG97_04375	Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
KMJ52319.1	KMJ52055.1	ACG97_14245	ACG97_15615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.479
KMJ52319.1	KMJ54174.1	ACG97_14245	ACG97_04375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
KMJ53720.1	KMJ54174.1	ACG97_07030	ACG97_04375	Nitrogen regulatory protein P-II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
KMJ53993.1	KMJ54174.1	ACG97_05585	ACG97_04375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KMJ54051.1	KMJ54174.1	ACG97_04385	ACG97_04375	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
KMJ54051.1	hldD	ACG97_04385	ACG97_04380	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.	0.727
KMJ54174.1	KMJ52055.1	ACG97_04375	ACG97_15615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.495
KMJ54174.1	KMJ52319.1	ACG97_04375	ACG97_14245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
KMJ54174.1	KMJ53720.1	ACG97_04375	ACG97_07030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen regulatory protein P-II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
KMJ54174.1	KMJ53993.1	ACG97_04375	ACG97_05585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KMJ54174.1	KMJ54051.1	ACG97_04375	ACG97_04385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
KMJ54174.1	KMJ54396.1	ACG97_04375	ACG97_03305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
KMJ54174.1	KMJ54785.1	ACG97_04375	ACG97_00415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
KMJ54174.1	apaH	ACG97_04375	ACG97_13795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diadenosine tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.	0.502
KMJ54174.1	hldD	ACG97_04375	ACG97_04380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.	0.466
KMJ54174.1	surE	ACG97_04375	ACG97_07555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.	0.436
KMJ54396.1	KMJ54174.1	ACG97_03305	ACG97_04375	Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
KMJ54785.1	KMJ54174.1	ACG97_00415	ACG97_04375	Nucleoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452