KMJ53447.1 protein (Vogesella sp. EB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KMJ53447.1

Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)

Predicted Functional Partners:

ubiE

0.848

ubiB

0.823

KMJ53449.1

0.805

KMJ53451.1

0.802

queA

0.801

KMJ53448.1

0.773

KMJ53951.1

0.635

KMJ53851.1

0.613

KMJ48715.1

0.577

KMJ53727.1

0.563

Your Current Organism:

Vogesella sp. EB

NCBI taxonomy Id: 1526735
Other names: V. sp. EB

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMJ48715.1	KMJ53447.1	ACG97_16410	ACG97_08015	Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
KMJ48715.1	KMJ53851.1	ACG97_16410	ACG97_06350	Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
KMJ53447.1	KMJ48715.1	ACG97_08015	ACG97_16410	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.	0.577
KMJ53447.1	KMJ53448.1	ACG97_08015	ACG97_08020	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KMJ53447.1	KMJ53449.1	ACG97_08015	ACG97_08025	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
KMJ53447.1	KMJ53451.1	ACG97_08015	ACG97_08035	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
KMJ53447.1	KMJ53727.1	ACG97_08015	ACG97_07075	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
KMJ53447.1	KMJ53851.1	ACG97_08015	ACG97_06350	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
KMJ53447.1	KMJ53951.1	ACG97_08015	ACG97_05340	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
KMJ53447.1	queA	ACG97_08015	ACG97_08040	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	S-adenosylmethionine tRNA ribosyltransferase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).	0.801
KMJ53447.1	ubiB	ACG97_08015	ACG97_08010	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinone biosynthesis protein UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.	0.823
KMJ53447.1	ubiE	ACG97_08015	ACG97_08030	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).	0.848
KMJ53448.1	KMJ53447.1	ACG97_08020	ACG97_08015	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KMJ53448.1	KMJ53449.1	ACG97_08020	ACG97_08025	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KMJ53448.1	KMJ53451.1	ACG97_08020	ACG97_08035	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KMJ53448.1	queA	ACG97_08020	ACG97_08040	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	S-adenosylmethionine tRNA ribosyltransferase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).	0.773
KMJ53448.1	ubiB	ACG97_08020	ACG97_08010	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinone biosynthesis protein UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.	0.762
KMJ53448.1	ubiE	ACG97_08020	ACG97_08030	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).	0.773
KMJ53449.1	KMJ53447.1	ACG97_08025	ACG97_08015	D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
KMJ53449.1	KMJ53448.1	ACG97_08025	ACG97_08020	D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773