STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN76351.1ABC-2 type transport system permease protein. (260 aa)    
Predicted Functional Partners:
SFN76314.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.892
SFN76390.1
ABC-2 type transport system permease protein.
 
    
0.885
SFO27589.1
Non-ribosomal peptide synthase domain TIGR01720.
  
  
 0.628
SFO10407.1
ABC-2 type transport system permease protein.
    
  0.507
SFO10564.1
ABC-2 type transport system permease protein.
    
  0.507
SFN76301.1
DNA-binding transcriptional regulator, ArsR family.
 
     0.493
SFO31004.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.490
SFO32695.1
Bacitracin transport system ATP-binding protein.
  
 
  0.486
SFO57198.1
Bacitracin transport system ATP-binding protein.
  
 
  0.484
SFO43522.1
Sodium transport system ATP-binding protein.
 
 
  0.483
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.