STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN77355.1Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family. (617 aa)    
Predicted Functional Partners:
SFN85452.1
Fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
   
    0.737
SFO25503.1
Uncharacterized sulfatase.
 
 0.704
SFN90751.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.703
SFO29092.1
Alpha-galactosidase.
 
 
 0.679
SFO52824.1
Xylan 1,4-beta-xylosidase.
    
  0.678
SFN90499.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
    
 0.662
SFO62516.1
Sugar phosphate isomerase/epimerase.
  
  
 0.642
SFO13699.1
FAD dependent oxidoreductase.
  
     0.619
SFN81415.1
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase.
   
 
 0.557
SFN88956.1
Gluconate 5-dehydrogenase.
   
 
 0.557
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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