STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN77617.1Extracellular solute-binding protein. (162 aa)    
Predicted Functional Partners:
SFN77640.1
Protein of unknown function.
     0.987
SFN77603.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  0.936
SFN77582.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 
  0.902
SFO49120.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.883
SFO49768.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.875
SFN99297.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.861
SFN77559.1
Two component transcriptional regulator, AraC family.
 
     0.833
SFO49110.1
Putative aldouronate transport system permease protein.
 
 
  0.830
SFO49755.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 
  0.807
SFN77484.1
Hypothetical protein.
 
     0.794
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.