STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN77767.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
    
  0.867
SFN80331.1
Autoinducer 2 (AI-2) kinase.
    
  0.682
SFO26081.1
Sugar (pentulose or hexulose) kinase.
    
  0.682
SFN77790.1
AraC-type DNA-binding protein.
       0.456
SFN77806.1
Fructokinase.
 
     0.417
SFN75199.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.413
SFO38806.1
General stress protein 26.
 
  
 0.402
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.