STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN81635.1S-formylglutathione hydrolase FrmB. (264 aa)    
Predicted Functional Partners:
SFO27589.1
Non-ribosomal peptide synthase domain TIGR01720.
  
 0.913
SFN81655.1
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.773
SFN81668.1
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.773
SFN81692.1
Simple sugar transport system ATP-binding protein.
       0.773
SFN95724.1
NADPH-dependent glutamate synthase beta chain.
  
 
  0.717
SFO06871.1
Putative selenate reductase.
   
 
  0.696
SFN95625.1
DNA-binding transcriptional regulator, FrmR family.
  
  
 0.690
SFN81707.1
Basic membrane protein A.
       0.504
SFN88979.1
2,4-dienoyl-CoA reductase.
  
 
 0.438
SFN81575.1
Glycine radical enzyme activase, YjjW family.
       0.432
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.