STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN87555.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (220 aa)    
Predicted Functional Partners:
SFN87578.1
Signal transduction histidine kinase.
  0.974
SFO33252.1
Signal transduction histidine kinase.
 0.904
SFO63802.1
Signal transduction histidine kinase.
 0.894
SFO04118.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.892
SFO04173.1
His Kinase A (phospho-acceptor) domain-containing protein.
  0.874
SFO66249.1
His Kinase A (phospho-acceptor) domain-containing protein.
  0.874
SFN76762.1
Signal transduction histidine kinase.
  0.866
SFO10782.1
Signal transduction histidine kinase.
 0.864
SFO66870.1
Signal transduction histidine kinase.
  0.857
SFN78256.1
Signal transduction histidine kinase.
 
 0.856
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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