STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN91803.1Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (302 aa)    
Predicted Functional Partners:
SFN91793.1
Aspartate dehydrogenase.
 
   
 0.910
SFO60388.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.908
SFN92786.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.901
SFO62773.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.899
SFO64104.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 
0.887
SFO06339.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
    
  0.867
SFN88707.1
Phosphoglycolate phosphatase.
    
  0.861
SFO62913.1
Phosphoglycolate phosphatase.
    
  0.860
SFO25237.1
Hydroxypyruvate reductase.
 
 
 0.807
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
    0.788
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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