STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN92923.1ATP-binding cassette, subfamily B. (594 aa)    
Predicted Functional Partners:
SFN92906.1
AraC-type DNA-binding protein.
 
     0.870
SFN92857.1
Energy-coupling factor transport system permease protein.
 
  
  0.862
SFN92938.1
ATP-binding cassette, subfamily B.
 
    
0.822
SFO27589.1
Non-ribosomal peptide synthase domain TIGR01720.
  
 0.821
SFN92890.1
Energy-coupling factor transport system substrate-specific component.
 
     0.803
SFN92877.1
Energy-coupling factor transport system ATP-binding protein.
  
 
0.745
SFO19372.1
AraC-type DNA-binding protein.
  
     0.739
SFO38974.1
Sulfonate transport system ATP-binding protein.
 
     
0.720
SFN78043.1
AraC-type DNA-binding protein.
  
     0.678
SFO15491.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
     
0.626
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.