STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN95762.1Helix-turn-helix domain-containing protein. (271 aa)    
Predicted Functional Partners:
SFO55594.1
Flagellar motor switch protein FliN/FliY.
  
 0.808
SFO45232.1
Two-component system, chemotaxis family, response regulator CheV.
  
 0.777
SFN95837.1
Two-component system, sensor histidine kinase YesM.
 
 0.712
SFO55444.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.689
SFO55607.1
Flagellar motor switch protein FliM.
  
 0.672
SFO16817.1
Two-component system, sensor histidine kinase YesM.
 
 0.671
SFN77546.1
Two-component system, sensor histidine kinase YesM.
 
  0.651
SFN95778.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.651
SFN95801.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.622
SFN80731.1
Two-component system, sensor histidine kinase YesM.
 
 0.601
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.