STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO03968.1N-acetylmuramoyl-L-alanine amidase. (223 aa)    
Predicted Functional Partners:
SFN82442.1
Beta-N-acetylglucosaminidase.
  
 
 0.764
SFO30241.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.751
SFO57110.1
Protein of unknown function.
   
  
 0.700
SFO34828.1
Subtilase family protein.
  
     0.527
SFO19197.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
     0.502
SFO08413.1
Subtilase family protein.
  
     0.499
SFO06387.1
LysM domain-containing protein.
  
   
 0.491
SFO03990.1
dCMP deaminase.
       0.489
SFO59517.1
Subtilase family protein.
  
     0.488
SFO62977.1
Subtilase family protein.
  
     0.450
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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