STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO04286.1Oxidoreductase family, NAD-binding Rossmann fold. (407 aa)    
Predicted Functional Partners:
iolE
2-keto-myo-inositol dehydratase; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol).
  
 
 0.782
SFO04305.1
Hypothetical protein.
   
   0.734
SFO04272.1
Hypothetical protein.
 
     0.656
SFO38151.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase.
  
  
 0.642
SFO04328.1
Oxidoreductase family, C-terminal alpha/beta domain.
 
    
0.633
SFO38134.1
5-deoxyglucuronate isomerase.
  
  
 0.631
SFN85204.1
Methyltransferase domain-containing protein.
  
     0.605
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.568
SFO38053.1
Sugar phosphate isomerase/epimerase.
  
 
 0.539
SFO62508.1
Sugar phosphate isomerase/epimerase.
  
 
 0.539
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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