STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO06904.1Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains. (212 aa)    
Predicted Functional Partners:
SFO06950.1
Putative selenium metabolism hydrolase.
 
     0.937
SFO06918.1
Diaminopropionate ammonia-lyase.
 
     0.934
SFO06970.1
Knotted carbamoyltransferase YgeW; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
     0.894
SFO06871.1
Putative selenate reductase.
 
     0.860
SFN80010.1
Putative selenate reductase.
 
     0.765
SFO06885.1
Putative selenium metabolism protein SsnA.
 
     0.711
SFO18884.1
Selenium-dependent xanthine dehydrogenase.
 
     0.611
SFO06808.1
Endoribonuclease L-PSP.
  
  
 0.440
SFO06640.1
Probable selenium-dependent hydroxylase accessory protein YqeC.
  
     0.438
SFO12774.1
Xanthine dehydrogenase FAD-binding subunit.
  
     0.436
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.