STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO06402.1Putative sporulation protein YyaC. (190 aa)    
Predicted Functional Partners:
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.806
SFO43459.1
Transcriptional regulator, AbrB family.
  
  
 0.763
SFO63655.1
Stage II sporulation protein E.
  
     0.752
SFO16764.1
Stage III sporulation protein AA.
  
     0.738
SFO16706.1
Stage III sporulation protein AD.
  
     0.732
SFN88920.1
ATP-dependent protease ClpP, protease subunit.
  
   
 0.730
SFN75335.1
Spore germination protein.
  
     0.723
SFO46126.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
     0.719
SFO16695.1
Stage III sporulation protein AE.
  
     0.714
SFO40557.1
Stage II sporulation protein R (spore_II_R).
  
     0.707
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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