STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO09726.1Uncharacterized conserved protein YgbK, DUF1537 family. (432 aa)    
Predicted Functional Partners:
SFO09742.1
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
     0.964
SFO09763.1
gluconate:H+ symporter, GntP family.
 
   
 0.877
SFO09705.1
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family.
 
  
 0.828
SFO25253.1
Predicted D-glycerate permease.
 
   
 0.574
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.