STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO14064.1Nitroreductase. (255 aa)    
Predicted Functional Partners:
SFO39608.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.834
SFO27589.1
Non-ribosomal peptide synthase domain TIGR01720.
   
 0.817
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.767
SFO10763.1
Hypothetical protein.
 
 
 
 0.702
SFO30055.1
CoA-disulfide reductase; Belongs to the sulfur carrier protein TusA family.
    
 0.656
SFO39575.1
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
    
 0.622
SFN91272.1
Multidrug/hemolysin transport system permease protein.
 
    0.612
SFO31022.1
ABC-2 type transport system permease protein.
 
    0.554
SFN76390.1
ABC-2 type transport system permease protein.
 
    0.522
SFO48405.1
Hypothetical protein.
 
  
 0.517
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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