STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO13747.1DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains. (283 aa)    
Predicted Functional Partners:
SFO11355.1
PTS system IIA component, Glc family.
  
 
 0.842
SFO40544.1
PTS system beta-glucoside-specific IIA component, Glc family /PTS system beta-glucoside-specific IIB component, Glc family /PTS system beta-glucoside-specific IIC component, Glc family.
  
 
 0.842
SFO63957.1
PTS system, glucose subfamily, IIA component.
  
 
 0.842
SFO67589.1
PTS system, glucose subfamily, IIA component.
  
 
 0.842
SFN92786.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.797
SFO60388.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.797
SFO62773.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.797
SFO67559.1
DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains.
  
     0.740
nanE
N-acylglucosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.646
SFN77729.1
PTS system IIB component, Glc family /PTS system IIC component, Glc family.
  
 
 0.546
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.