STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO15398.1DNA-binding transcriptional regulator, AcrR family. (193 aa)    
Predicted Functional Partners:
SFO15416.1
Uncharacterized protein, contains FMN-binding domain.
 
     0.711
SFO27589.1
Non-ribosomal peptide synthase domain TIGR01720.
     
 0.645
SFO39016.1
Methyltransferase domain-containing protein.
  
 
   0.607
SFO26214.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.493
SFO15433.1
Hypothetical protein.
       0.482
SFO15382.1
Diguanylate cyclase (GGDEF) domain-containing protein.
     
 0.456
SFO58137.1
Hypothetical protein.
  
     0.447
pth
peptidyl-tRNA hydrolase, PTH1 family; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.440
SFN86018.1
Phytoene dehydrogenase-related protein.
  
  
 0.416
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.