STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO25807.1Peptide/nickel transport system substrate-binding protein. (636 aa)    
Predicted Functional Partners:
SFO25711.1
Peptide/nickel transport system permease protein.
 
 0.909
SFO25692.1
Peptide/nickel transport system permease protein.
 
 0.892
SFO62773.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
    0.857
SFO25789.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
     0.844
SFN92786.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.831
SFO25749.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.813
SFO60388.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
    0.811
SFO25734.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.761
SFO25838.1
Acetyltransferase (GNAT) family protein.
 
     0.682
SFN92535.1
Peptide/nickel transport system permease protein.
  
 0.623
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.