STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO26081.1Sugar (pentulose or hexulose) kinase. (513 aa)    
Predicted Functional Partners:
SFO26093.1
Alkyldihydroxyacetonephosphate synthase.
 
   
 0.888
SFO21157.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.886
SFN90735.1
L-ribulose 5-phosphate 4-epimerase.
  
 
 0.867
xylB
Xylulokinase.
  
  
 
0.775
SFN77767.1
Hypothetical protein.
    
  0.682
SFO26023.1
Glycerol-3-phosphate dehydrogenase.
 
     0.629
SFO66614.1
L-fuculose-phosphate aldolase.
  
 
 0.595
SFO26041.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component.
       0.574
SFO26060.1
CxxC motif-containing protein.
       0.551
SFO26112.1
6-phosphofructokinase 1.
  
  
 0.542
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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