STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO28296.1Site-specific DNA recombinase. (522 aa)    
Predicted Functional Partners:
SFO28276.1
Hypothetical protein.
 
     0.948
SFO28207.1
Toxin secretion/phage lysis holin.
 
    0.834
SFO28261.1
Site-specific DNA recombinase.
 
    
0.811
SFO61110.1
Toxin secretion/phage lysis holin.
 
    0.705
SFO28228.1
Sporulation related domain-containing protein.
     0.670
SFO28039.1
Hypothetical protein.
 
    0.669
SFO28092.1
Phage-related protein.
 
     0.664
SFO28000.1
Phage head-tail joining protein.
 
    0.657
SFO28016.1
Phage protein, HK97 gp10 family.
 
    0.656
SFO28075.1
Hypothetical protein.
 
     0.649
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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