STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO28614.1DNA-binding response regulator, LytR/AlgR family. (239 aa)    
Predicted Functional Partners:
SFO32397.1
Sensor_kinase_SpoOB-type, alpha-helical domain.
 
 
  0.933
SFO18966.1
Sensor histidine kinase YesM.
 
  
 0.873
SFO30755.1
Two-component system, LytT family, sensor histidine kinase LytS.
 
 0.854
SFO33052.1
GHKL domain-containing protein.
 
 
  0.847
SFO66483.1
GHKL domain-containing protein.
 
  
 0.818
SFO19566.1
GHKL domain-containing protein.
 
  
 0.815
SFN85533.1
HAMP domain-containing protein.
 
 0.768
SFO32364.1
Accessory gene regulator B.
 
  
 0.756
SFN75295.1
Two-component system, sensor histidine kinase YesM.
  
 
  0.684
SFN77546.1
Two-component system, sensor histidine kinase YesM.
  
 
 0.671
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.