STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO29939.1Fe-S cluster assembly protein SufB. (475 aa)    
Predicted Functional Partners:
SFO29922.1
Iron-regulated ABC transporter ATPase subunit SufC.
 
 0.999
SFO29968.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.997
SFO29986.1
Modular FeS cluster scaffolding protein NifU.
 
  
 0.988
SFO29957.1
Iron-regulated ABC transporter permease protein SufD.
 
  
0.979
SFO61998.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.964
SFO21502.1
Nitrogen fixation protein NifU.
  
  
 0.855
SFO06623.1
Xanthine dehydrogenase accessory factor.
  
 
 0.759
SFO36541.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.709
SFO06737.1
Cysteine desulfurase family protein.
  
 0.625
SFO27589.1
Non-ribosomal peptide synthase domain TIGR01720.
  
  
 0.426
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.