STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO34974.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (391 aa)    
Predicted Functional Partners:
SFO34957.1
Peptide/nickel transport system permease protein.
 
 0.996
SFN92550.1
Peptide/nickel transport system permease protein.
 
 0.990
SFO41845.1
Peptide/nickel transport system permease protein.
 
 0.990
SFO64473.1
Oligopeptide transport system permease protein.
 
 0.989
SFO44622.1
Oligopeptide transport system permease protein.
 
 0.983
SFO34937.1
Peptide/nickel transport system permease protein.
 0.974
SFO25711.1
Peptide/nickel transport system permease protein.
 
 0.945
SFO34993.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.935
SFO40817.1
ABC-2 type transport system ATP-binding protein.
 
   
 
0.916
SFO64486.1
Oligopeptide transport system permease protein.
 0.914
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.