STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO36706.1DNA-binding transcriptional regulator, MerR family. (255 aa)    
Predicted Functional Partners:
SFO61709.1
DNA-binding transcriptional regulator, MerR family.
  
     0.705
SFO08244.1
DNA-binding transcriptional regulator, MerR family.
  
   
 0.638
SFO21960.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.624
SFN77242.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
    
 0.578
SFO21625.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.554
SFO60525.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.532
SFO43982.1
DNA-binding transcriptional regulator, MerR family.
  
   
 0.507
SFN87165.1
Molecular chaperone DnaJ.
  
 
 0.502
dnaJ
Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]
  
 
 0.502
SFO42495.1
Hypothetical protein.
  
 
 0.502
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.