Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN80976.1 | SFO18230.1 | SAMN04489757_10275 | SAMN04489757_11211 | Glutamine synthetase. | Pyridine nucleotide-disulphide oxidoreductase. | 0.943 |
SFN80976.1 | SFO38886.1 | SAMN04489757_10275 | SAMN04489757_12214 | Glutamine synthetase. | Nitrogenase molybdenum-iron protein beta chain. | 0.823 |
SFN80976.1 | SFO38902.1 | SAMN04489757_10275 | SAMN04489757_12215 | Glutamine synthetase. | Nitrogenase molybdenum-iron protein alpha chain. | 0.823 |
SFN80976.1 | hcp | SAMN04489757_10275 | SAMN04489757_11013 | Glutamine synthetase. | Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.859 |
SFN80976.1 | nifH | SAMN04489757_10275 | SAMN04489757_12213 | Glutamine synthetase. | Nitrogenase iron protein NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. | 0.903 |
SFO18230.1 | SFN80976.1 | SAMN04489757_11211 | SAMN04489757_10275 | Pyridine nucleotide-disulphide oxidoreductase. | Glutamine synthetase. | 0.943 |
SFO18230.1 | SFO38852.1 | SAMN04489757_11211 | SAMN04489757_12212 | Pyridine nucleotide-disulphide oxidoreductase. | Predicted Fe-Mo cluster-binding protein, NifX family. | 0.440 |
SFO18230.1 | SFO38886.1 | SAMN04489757_11211 | SAMN04489757_12214 | Pyridine nucleotide-disulphide oxidoreductase. | Nitrogenase molybdenum-iron protein beta chain. | 0.826 |
SFO18230.1 | SFO38902.1 | SAMN04489757_11211 | SAMN04489757_12215 | Pyridine nucleotide-disulphide oxidoreductase. | Nitrogenase molybdenum-iron protein alpha chain. | 0.826 |
SFO18230.1 | SFO38939.1 | SAMN04489757_11211 | SAMN04489757_12217 | Pyridine nucleotide-disulphide oxidoreductase. | Dinitrogenase iron-molybdenum cofactor. | 0.440 |
SFO18230.1 | SFO38956.1 | SAMN04489757_11211 | SAMN04489757_12218 | Pyridine nucleotide-disulphide oxidoreductase. | NitT/TauT family transport system permease protein. | 0.418 |
SFO18230.1 | SFO38986.1 | SAMN04489757_11211 | SAMN04489757_12220 | Pyridine nucleotide-disulphide oxidoreductase. | NitT/TauT family transport system substrate-binding protein. | 0.479 |
SFO18230.1 | hcp | SAMN04489757_11211 | SAMN04489757_11013 | Pyridine nucleotide-disulphide oxidoreductase. | Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.992 |
SFO18230.1 | nifH | SAMN04489757_11211 | SAMN04489757_12213 | Pyridine nucleotide-disulphide oxidoreductase. | Nitrogenase iron protein NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. | 0.912 |
SFO38836.1 | SFO38852.1 | SAMN04489757_12211 | SAMN04489757_12212 | Nitrogen fixation protein NifB. | Predicted Fe-Mo cluster-binding protein, NifX family. | 0.964 |
SFO38836.1 | SFO38886.1 | SAMN04489757_12211 | SAMN04489757_12214 | Nitrogen fixation protein NifB. | Nitrogenase molybdenum-iron protein beta chain. | 0.948 |
SFO38836.1 | SFO38902.1 | SAMN04489757_12211 | SAMN04489757_12215 | Nitrogen fixation protein NifB. | Nitrogenase molybdenum-iron protein alpha chain. | 0.922 |
SFO38836.1 | SFO38939.1 | SAMN04489757_12211 | SAMN04489757_12217 | Nitrogen fixation protein NifB. | Dinitrogenase iron-molybdenum cofactor. | 0.847 |
SFO38836.1 | SFO38956.1 | SAMN04489757_12211 | SAMN04489757_12218 | Nitrogen fixation protein NifB. | NitT/TauT family transport system permease protein. | 0.456 |
SFO38836.1 | SFO38986.1 | SAMN04489757_12211 | SAMN04489757_12220 | Nitrogen fixation protein NifB. | NitT/TauT family transport system substrate-binding protein. | 0.614 |
page 1 of 5