STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO41580.1Malate dehydrogenase (oxaloacetate-decarboxylating). (384 aa)    
Predicted Functional Partners:
SFO62773.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.953
SFO44745.1
Phosphate acetyltransferase.
 
 
 
 0.947
SFO60388.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.947
SFN92786.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.944
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
  
 0.881
SFO23071.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
   
 0.877
SFO51612.1
Fumarate hydratase subunit beta.
 
 
 0.877
SFO45101.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.862
SFN80010.1
Putative selenate reductase.
  
 
 0.833
SFO57736.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.820
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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