Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFN88355.1 | SFO36116.1 | SAMN04489757_103164 | SAMN04489757_12015 | Chemotaxis protein methyltransferase CheR. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.491 |
| SFN88355.1 | SFO43927.1 | SAMN04489757_103164 | SAMN04489757_12633 | Chemotaxis protein methyltransferase CheR. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.491 |
| SFO15682.1 | SFO36116.1 | SAMN04489757_11131 | SAMN04489757_12015 | Protein of unknown function. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.535 |
| SFO15682.1 | SFO43927.1 | SAMN04489757_11131 | SAMN04489757_12633 | Protein of unknown function. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.529 |
| SFO27589.1 | SFO36116.1 | SAMN04489757_1164 | SAMN04489757_12015 | Non-ribosomal peptide synthase domain TIGR01720. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.485 |
| SFO27589.1 | SFO43927.1 | SAMN04489757_1164 | SAMN04489757_12633 | Non-ribosomal peptide synthase domain TIGR01720. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.485 |
| SFO27589.1 | rpoA | SAMN04489757_1164 | SAMN04489757_13737 | Non-ribosomal peptide synthase domain TIGR01720. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.799 |
| SFO27589.1 | rpoB | SAMN04489757_1164 | SAMN04489757_1286 | Non-ribosomal peptide synthase domain TIGR01720. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.825 |
| SFO27589.1 | rpoC | SAMN04489757_1164 | SAMN04489757_1285 | Non-ribosomal peptide synthase domain TIGR01720. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.675 |
| SFO27589.1 | rpoZ | SAMN04489757_1164 | SAMN04489757_11343 | Non-ribosomal peptide synthase domain TIGR01720. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.795 |
| SFO36116.1 | SFN88355.1 | SAMN04489757_12015 | SAMN04489757_103164 | RNA polymerase sigma-70 factor, ECF subfamily. | Chemotaxis protein methyltransferase CheR. | 0.491 |
| SFO36116.1 | SFO15682.1 | SAMN04489757_12015 | SAMN04489757_11131 | RNA polymerase sigma-70 factor, ECF subfamily. | Protein of unknown function. | 0.535 |
| SFO36116.1 | SFO27589.1 | SAMN04489757_12015 | SAMN04489757_1164 | RNA polymerase sigma-70 factor, ECF subfamily. | Non-ribosomal peptide synthase domain TIGR01720. | 0.485 |
| SFO36116.1 | SFO42470.1 | SAMN04489757_12015 | SAMN04489757_1258 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.526 |
| SFO36116.1 | SFO43927.1 | SAMN04489757_12015 | SAMN04489757_12633 | RNA polymerase sigma-70 factor, ECF subfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.448 |
| SFO36116.1 | rpoA | SAMN04489757_12015 | SAMN04489757_13737 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.501 |
| SFO36116.1 | rpoB | SAMN04489757_12015 | SAMN04489757_1286 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.523 |
| SFO36116.1 | rpoC | SAMN04489757_12015 | SAMN04489757_1285 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.529 |
| SFO36116.1 | rpoZ | SAMN04489757_12015 | SAMN04489757_11343 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.500 |
| SFO42470.1 | SFO36116.1 | SAMN04489757_1258 | SAMN04489757_12015 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.526 |
page 1 of 3