STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO48930.1Carbohydrate ABC transporter substrate-binding protein, CUT1 family. (434 aa)    
Predicted Functional Partners:
SFO48903.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  0.960
SFO48917.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  0.946
SFO01594.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
  
 0.945
SFO60148.1
Raffinose/stachyose/melibiose transport system permease protein.
 
  0.931
SFO60138.1
Raffinose/stachyose/melibiose transport system permease protein.
  
  0.906
SFN95819.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
  
  0.884
SFO28999.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
  
  
 0.801
SFO60128.1
Raffinose/stachyose/melibiose transport system substrate-binding protein.
  
  
 
0.753
SFO16876.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
  
  0.750
SFN75251.1
Raffinose/stachyose/melibiose transport system permease protein.
  
  0.710
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.