STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO50713.1Putative ABC transport system ATP-binding protein. (223 aa)    
Predicted Functional Partners:
SFO50723.1
Putative ABC transport system permease protein.
 
 0.998
SFN73944.1
FtsX-like permease family protein.
 
 0.992
SFO42438.1
Putative ABC transport system permease protein.
 
 0.982
SFN97025.1
ABC-type transport system, involved in lipoprotein release, permease component.
  0.962
SFO50699.1
Signal transduction histidine kinase.
 
     0.814
SFO39297.1
ATP-binding cassette, subfamily B.
 
     
0.801
SFO67366.1
ATP-binding cassette, subfamily B.
 
     
0.800
SFN99197.1
ATP-binding cassette, subfamily B.
 
     
0.790
SFN99796.1
ATP-binding cassette, subfamily B.
 
     
0.778
SFO06546.1
Molybdate transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
   
 0.774
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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