STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO56553.1Spore maturation protein B. (175 aa)    
Predicted Functional Partners:
SFO56567.1
Spore maturation protein A.
  
 0.999
SFO44824.1
Sporulation integral membrane protein YlbJ.
 
  
 0.800
SFO16764.1
Stage III sporulation protein AA.
  
  
 0.694
SFN87247.1
Stage IV sporulation protein A.
  
   
 0.683
SFO16752.1
Stage III sporulation protein AB.
  
  
 0.681
SFN91998.1
Stage II sporulation protein P.
  
   
 0.628
SFO16706.1
Stage III sporulation protein AD.
  
   
 0.623
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.598
SFO56600.1
Transcriptional pleiotropic regulator of transition state genes.
 
     0.597
SFO59440.1
Sporulation protein YqfC.
  
   
 0.530
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.