STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO67532.16-phosphogluconolactonase. (341 aa)    
Predicted Functional Partners:
cutC
Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
  
    0.620
SFN77824.1
Galactose mutarotase.
 
  
 0.506
SFO13699.1
FAD dependent oxidoreductase.
  
     0.490
SFN80331.1
Autoinducer 2 (AI-2) kinase.
    
 0.472
SFO26081.1
Sugar (pentulose or hexulose) kinase.
    
 0.472
xylB
Xylulokinase.
    
 0.472
SFO67597.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
  0.454
SFO00328.1
dTDP-glucose 4,6-dehydratase.
     
  0.452
SFO10484.1
UDP-glucose 4-epimerase.
     
  0.452
SFO47998.1
UDP-glucuronate 4-epimerase.
     
  0.452
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.