STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO69018.1Protein of unknown function. (251 aa)    
Predicted Functional Partners:
SFO13623.1
Lysophospholipase L1.
 
  
 0.754
SFO42448.1
Lysophospholipase L1.
 
  
 0.744
SFN86453.1
Chitinase, GH18 family.
   
 
 0.684
SFO38704.1
Chitinase.
   
 
 0.684
SFO60598.1
Choice-of-anchor A domain-containing protein.
  
  
 0.555
SFO69037.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
 
 0.548
SFO59586.1
Hypothetical protein.
 
  
 0.536
SFO49811.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
      0.526
SFO04272.1
Hypothetical protein.
 
  
 0.515
SFO65159.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
  
  0.495
Your Current Organism:
Anaerocolumna aminovalerica
NCBI taxonomy Id: 1527
Other names: A. aminovalerica, ATCC 13725, CIP 104304, Clostridium aminovalericum, JCM 11016
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