STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM29848.1Protein CcmA, bactofilin family. (206 aa)    
Predicted Functional Partners:
SDM23237.1
Response regulator receiver domain-containing protein.
  
     0.579
SDM66944.1
Flagellar protein FliS.
    
 
 0.569
SDM61439.1
Protein of unknown function.
  
     0.566
SDM66710.1
Flagellar motor switch protein FliN/FliY.
    
 
 0.559
SDM53601.1
Protein of unknown function.
    
   0.558
SDM07877.1
ProQ/FINO family protein.
  
     0.549
SDL91674.1
Squalene-associated FAD-dependent desaturase.
  
     0.540
SDM13888.1
Cholesterol transport system auxiliary component.
  
    0.510
SDM18386.1
Protein of unknown function.
  
     0.507
SDM25591.1
Hypothetical protein.
  
     0.495
Your Current Organism:
Oryzisolibacter propanilivorax
NCBI taxonomy Id: 1527607
Other names: Alicycliphilus sp. EPL6, Alicycliphilus sp. LMG 28427, CECT 8927, LMG 28427, LMG:28427, O. propanilivorax, Oryzisolibacter propanilivorax Vaz-Moreira et al. 2017, strain EPL6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.