STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX43447.1Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (444 aa)    
Predicted Functional Partners:
SDY39415.1
Glutamate synthase domain-containing protein 2; Belongs to the glutamate synthase family.
  
 0.970
SDY07782.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.927
SDX31168.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.906
SDY18162.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.906
SDX93353.1
NAD-dependent protein deacetylase, SIR2 family.
   
 0.885
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
   
 0.885
SDX27907.1
Pyridine nucleotide-disulphide oxidoreductase.
  
 0.881
SDY03624.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreT.
  
 0.879
SDY39299.1
Glutamine synthetase.
  
 
 0.870
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.859
Your Current Organism:
Eubacterium barkeri
NCBI taxonomy Id: 1528
Other names: ATCC 25849, CIP 104307, Clostridium barkeri, E. barkeri, Inflabilis barati, VPI 5359
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