SDX63165.1 protein (Eubacterium barkeri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDX63165.1

Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5. (464 aa)

Predicted Functional Partners:

SDX63199.1

0.801

SDX63130.1

0.684

SDX63240.1

0.661

SDX63092.1

0.612

SDX63012.1

0.565

SDX63051.1

0.548

SDX63282.1

0.506

SDX99631.1

0.494

SDY07782.1

0.426

SDY31894.1

0.414

Your Current Organism:

Eubacterium barkeri

NCBI taxonomy Id: 1528
Other names: ATCC 25849, CIP 104307, Clostridium barkeri, E. barkeri, Inflabilis barati, VPI 5359

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDX63012.1	SDX63051.1	SAMN04488579_104137	SAMN04488579_104138	PucR C-terminal helix-turn-helix domain-containing protein.	Protein of unknown function.	0.773
SDX63012.1	SDX63092.1	SAMN04488579_104137	SAMN04488579_104139	PucR C-terminal helix-turn-helix domain-containing protein.	PucR C-terminal helix-turn-helix domain-containing protein.	0.798
SDX63012.1	SDX63130.1	SAMN04488579_104137	SAMN04488579_104140	PucR C-terminal helix-turn-helix domain-containing protein.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.858
SDX63012.1	SDX63165.1	SAMN04488579_104137	SAMN04488579_104141	PucR C-terminal helix-turn-helix domain-containing protein.	Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5.	0.565
SDX63012.1	SDX63199.1	SAMN04488579_104137	SAMN04488579_104142	PucR C-terminal helix-turn-helix domain-containing protein.	Glycoside/pentoside/hexuronide:cation symporter, GPH family.	0.661
SDX63012.1	SDX63240.1	SAMN04488579_104137	SAMN04488579_104143	PucR C-terminal helix-turn-helix domain-containing protein.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.835
SDX63012.1	SDX63282.1	SAMN04488579_104137	SAMN04488579_104144	PucR C-terminal helix-turn-helix domain-containing protein.	N-hydroxyarylamine O-acetyltransferase.	0.417
SDX63051.1	SDX63012.1	SAMN04488579_104138	SAMN04488579_104137	Protein of unknown function.	PucR C-terminal helix-turn-helix domain-containing protein.	0.773
SDX63051.1	SDX63092.1	SAMN04488579_104138	SAMN04488579_104139	Protein of unknown function.	PucR C-terminal helix-turn-helix domain-containing protein.	0.757
SDX63051.1	SDX63130.1	SAMN04488579_104138	SAMN04488579_104140	Protein of unknown function.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.621
SDX63051.1	SDX63165.1	SAMN04488579_104138	SAMN04488579_104141	Protein of unknown function.	Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5.	0.548
SDX63051.1	SDX63199.1	SAMN04488579_104138	SAMN04488579_104142	Protein of unknown function.	Glycoside/pentoside/hexuronide:cation symporter, GPH family.	0.548
SDX63051.1	SDX63240.1	SAMN04488579_104138	SAMN04488579_104143	Protein of unknown function.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.471
SDX63092.1	SDX63012.1	SAMN04488579_104139	SAMN04488579_104137	PucR C-terminal helix-turn-helix domain-containing protein.	PucR C-terminal helix-turn-helix domain-containing protein.	0.798
SDX63092.1	SDX63051.1	SAMN04488579_104139	SAMN04488579_104138	PucR C-terminal helix-turn-helix domain-containing protein.	Protein of unknown function.	0.757
SDX63092.1	SDX63130.1	SAMN04488579_104139	SAMN04488579_104140	PucR C-terminal helix-turn-helix domain-containing protein.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.828
SDX63092.1	SDX63165.1	SAMN04488579_104139	SAMN04488579_104141	PucR C-terminal helix-turn-helix domain-containing protein.	Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5.	0.612
SDX63092.1	SDX63199.1	SAMN04488579_104139	SAMN04488579_104142	PucR C-terminal helix-turn-helix domain-containing protein.	Glycoside/pentoside/hexuronide:cation symporter, GPH family.	0.665
SDX63092.1	SDX63240.1	SAMN04488579_104139	SAMN04488579_104143	PucR C-terminal helix-turn-helix domain-containing protein.	Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.	0.804
SDX63092.1	SDX63282.1	SAMN04488579_104139	SAMN04488579_104144	PucR C-terminal helix-turn-helix domain-containing protein.	N-hydroxyarylamine O-acetyltransferase.	0.439