STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF48322.1Tetratricopeptide repeat-containing protein. (408 aa)    
Predicted Functional Partners:
SFF48332.1
Major Facilitator Superfamily protein.
 
     0.880
SFG18871.1
Transmembrane secretion effector.
 
     0.665
SFG12586.1
MFS transporter, DHA3 family, macrolide efflux protein.
  
     0.603
cinA
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.598
SFG08674.1
Protein N-acetyltransferase, RimJ/RimL family.
  
    0.579
SFF55210.1
Tetratricopeptide repeat-containing protein.
  
  
  0.529
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.513
SFF65279.1
Hypothetical protein.
 
  
  0.504
SFG27781.1
Tetratricopeptide repeat-containing protein.
  
  
  0.493
SFF64664.1
Endo-alpha-N-acetylgalactosaminidase.
  
     0.465
Your Current Organism:
Clostridium cadaveris
NCBI taxonomy Id: 1529
Other names: ATCC 25783, Bacillus cadaveris, C. cadaveris, CCUG 24035, CIP 104314, Plectridium cadaveris
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