STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF59123.1PAS modulated sigma54 specific transcriptional regulator, Fis family. (593 aa)    
Predicted Functional Partners:
SFF64277.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
  
 0.843
SFF67544.1
Signal transduction histidine kinase.
    
 0.811
SFF59134.1
Diaminopropionate ammonia-lyase.
 
     0.534
SFF59144.1
Putative selenium metabolism hydrolase.
 
     0.497
SFF69617.1
PAS/PAC sensor signal transduction histidine kinase.
    
 0.467
SFF59152.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
  0.456
SFG14756.1
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains.
  
   
 0.411
SFF59112.1
Mn-containing catalase.
       0.403
Your Current Organism:
Clostridium cadaveris
NCBI taxonomy Id: 1529
Other names: ATCC 25783, Bacillus cadaveris, C. cadaveris, CCUG 24035, CIP 104314, Plectridium cadaveris
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