STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF69629.1Dipeptidase D. (487 aa)    
Predicted Functional Partners:
SFF50434.1
Aspartate aminotransferase.
 
 
  0.819
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
   
 
 0.814
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
   
 
 0.797
megL
Methionine-gamma-lyase.
    
 0.783
SFF77806.1
Cyanophycin synthetase.
  
 
 0.772
cysK
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.758
SFF49068.1
Aminotransferase.
   
  0.618
SFF84698.1
Aspartate/methionine/tyrosine aminotransferase.
   
  0.618
SFF59013.1
Cystathione beta-lyase.
    
  0.545
SFF69942.1
Cystathione beta-lyase.
    
  0.545
Your Current Organism:
Clostridium cadaveris
NCBI taxonomy Id: 1529
Other names: ATCC 25783, Bacillus cadaveris, C. cadaveris, CCUG 24035, CIP 104314, Plectridium cadaveris
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