STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF80514.1EDD domain protein, DegV family. (281 aa)    
Predicted Functional Partners:
SFF51350.1
Hypothetical protein.
 
 0.986
SFF80529.1
DNA-binding transcriptional regulator, PadR family.
  
    0.868
SFF51359.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
 
    0.671
SFF89629.1
Dihydroxyacetone kinase family protein.
 
   0.599
thiT
Thiamine transporter.
       0.474
SFF80563.1
Uncharacterized protein, MTH1187 family.
       0.424
SFF80498.1
Putative Mg2+ transporter-C (MgtC) family protein.
  
    0.417
Your Current Organism:
Clostridium cadaveris
NCBI taxonomy Id: 1529
Other names: ATCC 25783, Bacillus cadaveris, C. cadaveris, CCUG 24035, CIP 104314, Plectridium cadaveris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.