Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AJC11650.1 | AJC12532.1 | JI75_02080 | JI75_07505 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.591 |
| AJC11650.1 | rplC | JI75_02080 | JI75_03035 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.763 |
| AJC11650.1 | rplD | JI75_02080 | JI75_03040 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.969 |
| AJC11650.1 | rplM | JI75_02080 | JI75_00540 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.702 |
| AJC11650.1 | rplP | JI75_02080 | JI75_03085 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.688 |
| AJC11650.1 | rplU | JI75_02080 | JI75_06060 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.520 |
| AJC11650.1 | rplW | JI75_02080 | JI75_03045 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.717 |
| AJC11650.1 | rpsC | JI75_02080 | JI75_03080 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.979 |
| AJC11650.1 | rpsO | JI75_02080 | JI75_04025 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.962 |
| AJC11650.1 | rpsT | JI75_02080 | JI75_03950 | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.472 |
| AJC12532.1 | AJC11650.1 | JI75_07505 | JI75_02080 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Translation elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.591 |
| AJC12532.1 | rplC | JI75_07505 | JI75_03035 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.563 |
| AJC12532.1 | rplD | JI75_07505 | JI75_03040 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.574 |
| AJC12532.1 | rplM | JI75_07505 | JI75_00540 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.565 |
| AJC12532.1 | rplP | JI75_07505 | JI75_03085 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.558 |
| AJC12532.1 | rplU | JI75_07505 | JI75_06060 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.587 |
| AJC12532.1 | rplW | JI75_07505 | JI75_03045 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.558 |
| AJC12532.1 | rpsC | JI75_07505 | JI75_03080 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.566 |
| AJC12532.1 | rpsO | JI75_07505 | JI75_04025 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.567 |
| AJC12532.1 | rpsT | JI75_07505 | JI75_03950 | ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.594 |
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