AJC12586.1 protein (Coriobacteriaceae bacterium 6813)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

AJC12586.1

Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)

Predicted Functional Partners:

AJC12123.1

0.835

AJC12201.1

0.833

AJC12200.1

0.748

AJC12641.1

0.505

AJC12587.1

0.497

Your Current Organism:

Coriobacteriaceae bacterium 6813

NCBI taxonomy Id: 1531429
Other names: C. bacterium 68-1-3, Coriobacteriaceae bacterium 68-1-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC12123.1	AJC12201.1	JI75_05025	JI75_05510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJC12123.1	AJC12586.1	JI75_05025	JI75_07895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AJC12123.1	AJC12587.1	JI75_05025	JI75_07905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AJC12200.1	AJC12201.1	JI75_05500	JI75_05510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AJC12200.1	AJC12586.1	JI75_05500	JI75_07895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJC12200.1	AJC12587.1	JI75_05500	JI75_07905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AJC12201.1	AJC12123.1	JI75_05510	JI75_05025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJC12201.1	AJC12200.1	JI75_05510	JI75_05500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AJC12201.1	AJC12586.1	JI75_05510	JI75_07895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
AJC12201.1	AJC12587.1	JI75_05510	JI75_07905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AJC12586.1	AJC12123.1	JI75_07895	JI75_05025	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AJC12586.1	AJC12200.1	JI75_07895	JI75_05500	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJC12586.1	AJC12201.1	JI75_07895	JI75_05510	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
AJC12586.1	AJC12587.1	JI75_07895	JI75_07905	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJC12586.1	AJC12641.1	JI75_07895	JI75_08265	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.	0.505
AJC12587.1	AJC12123.1	JI75_07905	JI75_05025	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AJC12587.1	AJC12200.1	JI75_07905	JI75_05500	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AJC12587.1	AJC12201.1	JI75_07905	JI75_05510	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AJC12587.1	AJC12586.1	JI75_07905	JI75_07895	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJC12641.1	AJC12586.1	JI75_08265	JI75_07895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.	Lipopolysaccharide cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505

Network Stats

number of nodes:

11

number of edges:

26

average node degree:

4.73

avg. local clustering coefficient:

0.847

expected number of edges:

24

PPI enrichment p-value:

0.404

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0043161

Proteasome-mediated ubiquitin-dependent protein catabolic process

5 of 240

1.44

1.13

0.0022

GO:0006511

Ubiquitin-dependent protein catabolic process

6 of 410

1.29

1.02

0.0022

GO:0019538

Protein metabolic process

9 of 2939

0.61

0.4

0.0189

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0034657

GID complex

2 of 4

2.82

1.08

0.0112

GO:0000151

Ubiquitin ligase complex

4 of 236

1.35

0.8

0.0155

GO:0140535

Intracellular protein-containing complex

5 of 577

1.06

0.65

0.0180

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:23827

Mixed, incl. CRA domain, and GID complex

7 of 16

2.76

7.26

9.01e-15

CL:23822

Mostly uncharacterized, incl. CRA domain, and Yip1 domain

8 of 55

2.29

6.21

1.94e-14

CL:23831

GID complex, and CRA domain

5 of 10

2.82

5.26

1.31e-10

CL:23834

CRA domain, and GID complex

4 of 5

3.03

4.36

9.84e-09

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0034657

GID complex

3 of 4

3.0

2.61

1.80e-05

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR016244

Tyrosine-protein kinase, HGF/MSP receptor

2 of 2

3.12

1.03

0.0142

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00429

Ig-like, plexins, transcription factors

2 of 13

2.31

0.79

0.0352

SM00630

Semaphorin domain

2 of 21

2.1

0.74

0.0423

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