STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JL57_06865Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)    
Predicted Functional Partners:
JL57_05875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.805
JL57_00015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.783
JL57_25795
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.692
JL57_15365
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.670
JL57_32890
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.649
JL57_05880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.647
JL57_04055
RNA polymerase sigma factor WhiG; Involved in the initiation of sporulation and glycogen biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.636
JL57_04045
Flagellar hook capping protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.628
JL57_03160
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.624
JL57_00900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.611
Your Current Organism:
Desulfosporosinus sp. BICA19
NCBI taxonomy Id: 1531958
Other names: D. sp. BICA1-9, Desulfosporosinus sp. BICA1-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.