STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JL57_08315Aspartate ammonia-lyase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)    
Predicted Functional Partners:
JL57_08585
PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.870
JL57_06025
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.859
JL57_29350
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.826
JL57_09750
Asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.820
JL57_20775
Asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.820
JL57_24855
Asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.820
JL57_08310
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.796
JL57_18760
Aspartate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.769
JL57_20095
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.765
JL57_08335
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.763
Your Current Organism:
Desulfosporosinus sp. BICA19
NCBI taxonomy Id: 1531958
Other names: D. sp. BICA1-9, Desulfosporosinus sp. BICA1-9
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